com.milaboratory.mitools.cli

Class SplitAction

java.lang.Object

com.milaboratory.mitools.cli.SplitAction

All Implemented Interfaces:

com.milaboratory.cli.Action

public class SplitAction
extends Object
implements com.milaboratory.cli.Action

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SplitAction.AParameters

Constructor Summary

Constructors

Constructor and Description
SplitAction()

Method Summary

Methods

Modifier and Type	Method and Description
String	command()
int	generateSize(org.apache.commons.math3.random.RandomGenerator generator, int min, int max)
String	getOutputFileName(int readId, int partId)
com.milaboratory.core.io.sequence.SequenceReaderCloseable<?>	getSequenceReader()
com.milaboratory.core.io.sequence.SequenceWriter<?>	getSequenceWriter(int partId)
void	go(com.milaboratory.cli.ActionHelper helper)
com.milaboratory.cli.ActionParameters	params()
String	partIndexToString(int val)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SplitAction

public SplitAction()

Method Detail

go

public void go(com.milaboratory.cli.ActionHelper helper)
        throws Exception

Specified by:

go in interface com.milaboratory.cli.Action

Throws:

Exception

command

public String command()

Specified by:

command in interface com.milaboratory.cli.Action

params

public com.milaboratory.cli.ActionParameters params()

Specified by:

params in interface com.milaboratory.cli.Action

generateSize

public int generateSize(org.apache.commons.math3.random.RandomGenerator generator,
               int min,
               int max)

getSequenceWriter

public com.milaboratory.core.io.sequence.SequenceWriter<?> getSequenceWriter(int partId)
                                                                      throws IOException

Throws:

IOException

getOutputFileName

public String getOutputFileName(int readId,
                       int partId)

partIndexToString

public String partIndexToString(int val)

getSequenceReader

public com.milaboratory.core.io.sequence.SequenceReaderCloseable<?> getSequenceReader()
                                                                               throws IOException

Throws:

IOException