com.milaboratory.mitools.cli

Class RandomizeAction.AParameters

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

com.milaboratory.mitools.cli.RandomizeAction.AParameters

Enclosing class:

RandomizeAction

public static final class RandomizeAction.AParameters
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
int	chunkSize
List<String>	parameters
Long	seed
String	tmpDir

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
RandomizeAction.AParameters()

Method Summary

Methods

Modifier and Type	Method and Description
protected List<String>	getOutputFiles()
com.milaboratory.core.io.sequence.SequenceReaderCloseable<com.milaboratory.core.io.sequence.SequenceRead>	getReader()
long	getSeed()
com.milaboratory.core.io.sequence.SequenceWriter<com.milaboratory.core.io.sequence.SequenceRead>	getWriter()
void	validate()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

isForceOverwrite

Methods inherited from class com.milaboratory.cli.ActionParameters

help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public List<String> parameters

seed

public Long seed

chunkSize

public int chunkSize

tmpDir

public String tmpDir

Constructor Detail

RandomizeAction.AParameters

public RandomizeAction.AParameters()

Method Detail

getSeed

public long getSeed()

getReader

public com.milaboratory.core.io.sequence.SequenceReaderCloseable<com.milaboratory.core.io.sequence.SequenceRead> getReader()
                                                                                                                    throws IOException

Throws:

IOException

getWriter

public com.milaboratory.core.io.sequence.SequenceWriter<com.milaboratory.core.io.sequence.SequenceRead> getWriter()
                                                                                                           throws IOException

Throws:

IOException

getOutputFiles

protected List<String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput

validate

public void validate()

Overrides:

validate in class com.milaboratory.cli.ActionParametersWithOutput