htsjdk.variant.variantcontext

Interfaces

• Allele
• LazyGenotypesContext.LazyParser

Classes

• CommonInfo
• FastGenotype
• Genotype
• GenotypeBuilder
• GenotypeJEXLContext
• GenotypeLikelihoods
• GenotypeLikelihoods.GenotypeLikelihoodsAllelePair
• GenotypesContext
• LazyGenotypesContext
• LazyGenotypesContext.LazyData
• SimpleAllele
• VariantContext
• VariantContextBuilder
• VariantContextComparator
• VariantContextUtils
• VariantContextUtils.JexlVCMatchExp

Enums

• GenotypeType
• JexlMissingValueTreatment
• StructuralVariantType
• VariantContext.Type
• VariantContext.Validation