htsjdk.tribble.gff

Enum Gff3Codec.Gff3Directive

java.lang.Object

java.lang.Enum<Gff3Codec.Gff3Directive>

htsjdk.tribble.gff.Gff3Codec.Gff3Directive

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<Gff3Codec.Gff3Directive>

Enclosing class:

Gff3Codec

public static enum Gff3Codec.Gff3Directive
extends java.lang.Enum<Gff3Codec.Gff3Directive>

Enum for parsing directive lines. If information in directive line needs to be parsed beyond specifying directive type, decode method should be overriden

Enum Constant Summary

Enum Constants

Enum Constant and Description
FASTA_DIRECTIVE
FLUSH_DIRECTIVE
SEQUENCE_REGION_DIRECTIVE
VERSION3_DIRECTIVE

Field Summary

Fields

Modifier and Type	Field and Description
protected java.util.regex.Pattern	regexPattern

Method Summary

Modifier and Type	Method and Description
protected java.lang.Object	decode(java.lang.String line)
static Gff3Codec.Gff3Directive	toDirective(java.lang.String line)
static Gff3Codec.Gff3Directive	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static Gff3Codec.Gff3Directive[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

VERSION3_DIRECTIVE

public static final Gff3Codec.Gff3Directive VERSION3_DIRECTIVE

SEQUENCE_REGION_DIRECTIVE

public static final Gff3Codec.Gff3Directive SEQUENCE_REGION_DIRECTIVE

FLUSH_DIRECTIVE

public static final Gff3Codec.Gff3Directive FLUSH_DIRECTIVE

FASTA_DIRECTIVE

public static final Gff3Codec.Gff3Directive FASTA_DIRECTIVE

Field Detail

regexPattern

protected final java.util.regex.Pattern regexPattern

Method Detail

values

public static Gff3Codec.Gff3Directive[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Gff3Codec.Gff3Directive c : Gff3Codec.Gff3Directive.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Gff3Codec.Gff3Directive valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

toDirective

public static Gff3Codec.Gff3Directive toDirective(java.lang.String line)

decode

protected java.lang.Object decode(java.lang.String line)
                           throws java.io.IOException

Throws:

java.io.IOException