htsjdk.tribble.gff

Class Gff3BaseData

java.lang.Object

htsjdk.tribble.gff.Gff3BaseData

public class Gff3BaseData
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
Gff3BaseData(java.lang.String contig, java.lang.String source, java.lang.String type, int start, int end, java.lang.Double score, Strand strand, int phase, java.util.Map<java.lang.String,java.util.List<java.lang.String>> attributes)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object other)
java.util.List<java.lang.String>	getAliases()
java.util.List<java.lang.String>	getAttribute(java.lang.String key)
java.util.Map<java.lang.String,java.util.List<java.lang.String>>	getAttributes()
java.lang.String	getContig()
int	getEnd()
java.lang.String	getId()
java.lang.String	getName()
int	getPhase()
double	getScore()
java.lang.String	getSource()
int	getStart()
Strand	getStrand()
java.lang.String	getType()
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Gff3BaseData

public Gff3BaseData(java.lang.String contig,
                    java.lang.String source,
                    java.lang.String type,
                    int start,
                    int end,
                    java.lang.Double score,
                    Strand strand,
                    int phase,
                    java.util.Map<java.lang.String,java.util.List<java.lang.String>> attributes)

Method Detail

equals

public boolean equals(java.lang.Object other)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

getContig

public java.lang.String getContig()

getSource

public java.lang.String getSource()

getType

public java.lang.String getType()

getStart

public int getStart()

getEnd

public int getEnd()

getScore

public double getScore()

getStrand

public Strand getStrand()

getPhase

public int getPhase()

getAttributes

public java.util.Map<java.lang.String,java.util.List<java.lang.String>> getAttributes()

getAttribute

public java.util.List<java.lang.String> getAttribute(java.lang.String key)

getId

public java.lang.String getId()

getName

public java.lang.String getName()

getAliases

public java.util.List<java.lang.String> getAliases()