htsjdk.samtools.util

Class TerminatorlessBlockCompressedOutputStream

java.lang.Object

java.io.OutputStream

htsjdk.samtools.util.BlockCompressedOutputStream

htsjdk.samtools.util.TerminatorlessBlockCompressedOutputStream

All Implemented Interfaces:

LocationAware, java.io.Closeable, java.io.Flushable, java.lang.AutoCloseable

public class TerminatorlessBlockCompressedOutputStream
extends BlockCompressedOutputStream

An extension of BlockCompressedOutputStream that doesn't write an empty BGZF block at the end of the stream.

Constructor Summary

Constructors

Constructor and Description
TerminatorlessBlockCompressedOutputStream(java.io.OutputStream os)

Method Summary

Modifier and Type	Method and Description
void	close() close() must be called in order to flush any remaining buffered bytes.

Methods inherited from class htsjdk.samtools.util.BlockCompressedOutputStream

addIndexer, close, flush, getDefaultCompressionLevel, getDefaultDeflaterFactory, getFilePointer, getPosition, maybeBgzfWrapOutputStream, setDefaultCompressionLevel, setDefaultDeflaterFactory, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TerminatorlessBlockCompressedOutputStream

public TerminatorlessBlockCompressedOutputStream(java.io.OutputStream os)

Method Detail

close

public void close()
           throws java.io.IOException

Description copied from class: BlockCompressedOutputStream

close() must be called in order to flush any remaining buffered bytes. An unclosed file will likely be defective.

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable

Overrides:

close in class BlockCompressedOutputStream

Throws:

java.io.IOException