htsjdk.samtools.util

Class SamConstants

java.lang.Object

htsjdk.samtools.util.SamConstants

public final class SamConstants
extends java.lang.Object

A set of constants defined in the sam-spec (https://github.com/samtools/hts-specs) that need to be referenced in code.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	BARCODE_QUALITY_DELIMITER The recommend separator to use when specifying multiple barcode quality scores together in the same tag.
static java.lang.String	BARCODE_SEQUENCE_DELIMITER The recommended separator to use when specifying multiple barcodes together in the same tag.

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

BARCODE_SEQUENCE_DELIMITER

public static final java.lang.String BARCODE_SEQUENCE_DELIMITER

The recommended separator to use when specifying multiple barcodes together in the same tag.

See Also:

Constant Field Values

BARCODE_QUALITY_DELIMITER

public static final java.lang.String BARCODE_QUALITY_DELIMITER

The recommend separator to use when specifying multiple barcode quality scores together in the same tag.

See Also:

Constant Field Values