htsjdk.samtools.util

Enum AbstractRecordAndOffset.AlignmentType

java.lang.Object

java.lang.Enum<AbstractRecordAndOffset.AlignmentType>

htsjdk.samtools.util.AbstractRecordAndOffset.AlignmentType

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<AbstractRecordAndOffset.AlignmentType>

Enclosing class:

AbstractRecordAndOffset

public static enum AbstractRecordAndOffset.AlignmentType
extends java.lang.Enum<AbstractRecordAndOffset.AlignmentType>

Classifies whether the given event is a match, insertion, or deletion. This is deliberately not expressed as CIGAR operators, since there is no knowledge of the CIGAR string at the time that this is determined.

Enum Constant Summary

Enum Constants

Enum Constant and Description
Deletion
Insertion
Match

Method Summary

Modifier and Type	Method and Description
static AbstractRecordAndOffset.AlignmentType	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static AbstractRecordAndOffset.AlignmentType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Match

public static final AbstractRecordAndOffset.AlignmentType Match

Insertion

public static final AbstractRecordAndOffset.AlignmentType Insertion

Deletion

public static final AbstractRecordAndOffset.AlignmentType Deletion

Method Detail

values

public static AbstractRecordAndOffset.AlignmentType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (AbstractRecordAndOffset.AlignmentType c : AbstractRecordAndOffset.AlignmentType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static AbstractRecordAndOffset.AlignmentType valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null