htsjdk.samtools.fastq

Class BasicFastqWriter

java.lang.Object

htsjdk.samtools.fastq.BasicFastqWriter

All Implemented Interfaces:

Writer<FastqRecord>, FastqWriter, java.io.Closeable, java.io.Flushable, java.lang.AutoCloseable

public class BasicFastqWriter
extends java.lang.Object
implements FastqWriter, java.io.Flushable

In general FastqWriterFactory should be used so that AsyncFastqWriter can be enabled, but there are some cases in which that behavior is explicitly not wanted.

Constructor Summary

Constructors

Constructor and Description
BasicFastqWriter(java.io.File file)
BasicFastqWriter(java.io.File file, boolean createMd5)
BasicFastqWriter(java.io.PrintStream writer)

Method Summary

Modifier and Type	Method and Description
void	close()
void	flush()
void	write(FastqRecord rec) Writes one item.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.io.Writer

write

Constructor Detail

BasicFastqWriter

public BasicFastqWriter(java.io.File file)

BasicFastqWriter

public BasicFastqWriter(java.io.File file,
                        boolean createMd5)

BasicFastqWriter

public BasicFastqWriter(java.io.PrintStream writer)

Method Detail

write

public void write(FastqRecord rec)

Description copied from interface: Writer

Writes one item.

Specified by:

write in interface Writer<FastqRecord>

Specified by:

write in interface FastqWriter

Parameters:

rec - the item to write.

flush

public void flush()

Specified by:

flush in interface java.io.Flushable

close

public void close()

Specified by:

close in interface FastqWriter

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable