htsjdk.samtools.cram.structure

Classes

• AlignmentContext
• AlignmentSpan
• CompressionHeader
• CompressionHeaderEncodingMap
• CompressorCache
• Container
• ContainerHeader
• CRAMCompressionRecord
• CRAMEncodingStrategy
• CramHeader
• CRAMRecordReadFeatures
• EncodingDescriptor
• ReadTag
• Slice
• SliceBlocks
• SliceBlocksReadStreams
• SliceBlocksWriteStreams
• SubstitutionMatrix

Enums

• DataSeries
• DataSeriesType
• EncodingID