htsjdk.samtools.cram.io

Class DefaultBitOutputStream

java.lang.Object

java.io.OutputStream

htsjdk.samtools.cram.io.DefaultBitOutputStream

All Implemented Interfaces:

BitOutputStream, java.io.Closeable, java.io.Flushable, java.lang.AutoCloseable

public class DefaultBitOutputStream
extends java.io.OutputStream
implements BitOutputStream

Constructor Summary

Constructors

Constructor and Description
DefaultBitOutputStream(java.io.OutputStream delegate)

Method Summary

Modifier and Type	Method and Description
void	close()
void	flush()
java.lang.String	toString()
void	write(boolean bit) Write a single bit specified in the boolean argument.
void	write(boolean bit, long repeat) Write a single bit specified in the boolean argument repeatedly.
void	write(byte b)
void	write(byte[] b)
void	write(byte[] b, int off, int length)
void	write(byte bitContainer, int nofBits) Write specified number of bits supplied in the byte value.
void	write(int value)
void	write(int bitContainer, int nofBits) Write specified number of bits supplied in the integer value.
void	write(long bitContainer, int nofBits) Write specified number of bits supplied in the long value.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DefaultBitOutputStream

public DefaultBitOutputStream(java.io.OutputStream delegate)

Method Detail

write

public void write(byte b)

write

public void write(int value)

Specified by:

write in class java.io.OutputStream

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

write

public void write(long bitContainer,
                  int nofBits)

Description copied from interface: BitOutputStream

Write specified number of bits supplied in the long value. The method is naturally limited to 64 bits max.

Specified by:

write in interface BitOutputStream

Parameters:

bitContainer - an integer containing the bits to be written out

nofBits - the number of bits to written out, minimum 0, maximum 64.

write

public void write(int bitContainer,
                  int nofBits)

Description copied from interface: BitOutputStream

Write specified number of bits supplied in the integer value. The method is naturally limited to 32 bits max.

Specified by:

write in interface BitOutputStream

Parameters:

bitContainer - an integer containing the bits to be written out

nofBits - the number of bits to written out, minimum 0, maximum 32.

write

public void write(byte bitContainer,
                  int nofBits)

Description copied from interface: BitOutputStream

Write specified number of bits supplied in the byte value. The method is naturally limited to 8 bits max.

Specified by:

write in interface BitOutputStream

Parameters:

bitContainer - an integer containing the bits to be written out

nofBits - the number of bits to written out, minimum 0, maximum 8.

write

public void write(boolean bit)

Description copied from interface: BitOutputStream

Write a single bit specified in the boolean argument.

Specified by:

write in interface BitOutputStream

Parameters:

bit - emit 1 if true, 0 otherwise.

write

public void write(boolean bit,
                  long repeat)

Description copied from interface: BitOutputStream

Write a single bit specified in the boolean argument repeatedly.

Specified by:

write in interface BitOutputStream

Parameters:

bit - emit 1 if true, 0 otherwise.

repeat - the number of bits to emit.

close

public void close()

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable

Overrides:

close in class java.io.OutputStream

flush

public void flush()

Specified by:

flush in interface java.io.Flushable

Overrides:

flush in class java.io.OutputStream

write

public void write(byte[] b)

Overrides:

write in class java.io.OutputStream

write

public void write(byte[] b,
                  int off,
                  int length)

Overrides:

write in class java.io.OutputStream