htsjdk.samtools.cram.encoding.external

Class ExternalIntegerEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.CRAMEncoding<T>

htsjdk.samtools.cram.encoding.external.ExternalEncoding<java.lang.Integer>

htsjdk.samtools.cram.encoding.external.ExternalIntegerEncoding

public final class ExternalIntegerEncoding
extends ExternalEncoding<java.lang.Integer>

Field Summary

Fields inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding

externalBlockContentId

Constructor Summary

Constructors

Constructor and Description
ExternalIntegerEncoding(int externalBlockContentId)

Method Summary

Modifier and Type	Method and Description
CRAMCodec<java.lang.Integer>	buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams) Instantiate the codec represented by this encoding by supplying it with the appropriate streams
static ExternalIntegerEncoding	fromSerializedEncodingParams(byte[] serializedParams) Create a new instance of this encoding using the (ITF8 encoded) serializedParams.

Methods inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding

toSerializedEncodingParams, toString

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding

buildReadCodec, buildWriteCodec, id, toEncodingDescriptor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ExternalIntegerEncoding

public ExternalIntegerEncoding(int externalBlockContentId)

Method Detail

fromSerializedEncodingParams

public static ExternalIntegerEncoding fromSerializedEncodingParams(byte[] serializedParams)

Create a new instance of this encoding using the (ITF8 encoded) serializedParams.

Parameters:

serializedParams -

Returns:

ExternalIntegerEncoding with parameters populated from serializedParams

buildCodec

public CRAMCodec<java.lang.Integer> buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams,
                                               SliceBlocksWriteStreams sliceBlocksWriteStreams)

Description copied from class: CRAMEncoding

Instantiate the codec represented by this encoding by supplying it with the appropriate streams

Specified by:

buildCodec in class CRAMEncoding<java.lang.Integer>

Parameters:

sliceBlocksReadStreams - the core block bit stream a CoreCodec will read from

sliceBlocksWriteStreams - the core block bit stream a CoreCodec will write to

Returns:

a newly instantiated codec