htsjdk.samtools.cram.compression

Class RANSExternalCompressor

java.lang.Object

htsjdk.samtools.cram.compression.ExternalCompressor

htsjdk.samtools.cram.compression.RANSExternalCompressor

public final class RANSExternalCompressor
extends ExternalCompressor

Field Summary

Fields inherited from class htsjdk.samtools.cram.compression.ExternalCompressor

NO_COMPRESSION_ARG

Constructor Summary

Constructors

Constructor and Description
RANSExternalCompressor(int order, RANS rans)
RANSExternalCompressor(RANS.ORDER order, RANS rans)
RANSExternalCompressor(RANS rans) We use a shared RANS instance for all compressors.

Method Summary

Modifier and Type	Method and Description
byte[]	compress(byte[] data)
boolean	equals(java.lang.Object o)
RANS.ORDER	getOrder()
int	hashCode()
java.lang.String	toString()
byte[]	uncompress(byte[] data)

Methods inherited from class htsjdk.samtools.cram.compression.ExternalCompressor

getCompressorForMethod, getMethod

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

RANSExternalCompressor

public RANSExternalCompressor(RANS rans)

We use a shared RANS instance for all compressors.

Parameters:

rans -

RANSExternalCompressor

public RANSExternalCompressor(int order,
                              RANS rans)

RANSExternalCompressor

public RANSExternalCompressor(RANS.ORDER order,
                              RANS rans)

Method Detail

compress

public byte[] compress(byte[] data)

Specified by:

compress in class ExternalCompressor

uncompress

public byte[] uncompress(byte[] data)

Specified by:

uncompress in class ExternalCompressor

getOrder

public RANS.ORDER getOrder()

toString

public java.lang.String toString()

Overrides:

toString in class ExternalCompressor

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class ExternalCompressor

hashCode

public int hashCode()

Overrides:

hashCode in class ExternalCompressor