Package htsjdk.samtools.cram.build

Class Summary

Class	Description
CompressionHeaderFactory	Factory for creating CRAM compression headers for containers when writing to a CRAM stream.
ContainerFactory	Aggregates SAMRecord objects into one or more Containers, composed of one or more Slices.
CramContainerHeaderIterator	Iterate over CRAM containers from an input stream, and unlike CramContainerIterator only the header of each container is read, rather than the whole stream.
CramContainerIterator	An iterator of CRAM containers read from an InputStream.
CramIO	A collection of methods to read and write special values to/from CRAM files.
CRAMReferenceRegion	Holds a region/fragment of a reference contig.
CramSpanContainerIterator	An iterator of CRAM containers read from locations in a SeekableStream.
SliceFactory	Factory for creating Slices when writing a CRAM stream.
Utils