htsjdk.beta.plugin.variants

Interface VariantsDecoder

All Superinterfaces:

java.lang.AutoCloseable, java.io.Closeable, HtsDecoder<VCFHeader,VariantContext>, HtsQuery<VariantContext>, java.lang.Iterable<VariantContext>

All Known Implementing Classes:

VCFDecoder, VCFDecoderV3_2, VCFDecoderV3_3, VCFDecoderV4_0, VCFDecoderV4_1, VCFDecoderV4_2, VCFDecoderV4_3

public interface VariantsDecoder
extends HtsDecoder<VCFHeader,VariantContext>

Base class for all HtsContentType.VARIANT_CONTEXTS decoders.

Method Summary

Methods inherited from interface htsjdk.beta.plugin.HtsDecoder

close, getDisplayName, getFileFormat, getHeader, getVersion

Methods inherited from interface htsjdk.beta.plugin.interval.HtsQuery

hasIndex, isQueryable, iterator, query, query, query, query, queryContained, queryContained, queryContained, queryOverlapping, queryOverlapping, queryOverlapping, queryStart

Methods inherited from interface java.lang.Iterable

forEach, spliterator