htsjdk.beta.plugin.registry

Class HtsDefaultRegistry

java.lang.Object

htsjdk.beta.plugin.registry.HtsDefaultRegistry

public class HtsDefaultRegistry
extends java.lang.Object

A global, static, immutable, public registry for HtsCodec instances. The HtsDefaultRegistry is populated using dynamic discovery of HtsCodec implementations by a ServiceLoader. To create a private, mutable registry for resolving inputs against custom codec implementations, use HtsCodecRegistry.createPrivateRegistry().

Constructor Summary

Constructors

Constructor and Description
HtsDefaultRegistry()

Method Summary

Modifier and Type	Method and Description
static HaploidReferenceResolver	getHaploidReferenceResolver() Grt the HaploidReferenceResolver resolver for this registry.
static ReadsResolver	getReadsResolver() Gt the ReadsResolver resolver for this registry.
static VariantsResolver	getVariantsResolver() Get the VariantsResolver resolver for this registry.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HtsDefaultRegistry

public HtsDefaultRegistry()

Method Detail

getHaploidReferenceResolver

public static HaploidReferenceResolver getHaploidReferenceResolver()

Grt the HaploidReferenceResolver resolver for this registry.

Returns:

the HaploidReferenceResolver resolver for this registry

getReadsResolver

public static ReadsResolver getReadsResolver()

Gt the ReadsResolver resolver for this registry.

Returns:

the ReadsResolver resolver for this registry

getVariantsResolver

public static VariantsResolver getVariantsResolver()

Get the VariantsResolver resolver for this registry.

Returns:

the VariantsResolver resolver for this registry