| Interface | Description |
|---|---|
| ReadsCodec |
Base class for all
HtsContentType.ALIGNED_READS codecs. |
| ReadsDecoder |
Base class for all
HtsContentType.ALIGNED_READS decoders. |
| ReadsEncoder |
Base interface for
HtsContentType.ALIGNED_READS encoders. |
| ReadsQuery<R extends HtsRecord> |
Query methods specific to
ReadsDecoders. |
| Class | Description |
|---|---|
| ReadsBundle<T extends IOPath> |
A
Bundle specifically for reads and reads-related resources. |
| ReadsDecoderOptions |
Reads decoder options (shared/common).
|
| ReadsEncoderOptions |
General reads encoder options.
|
| ReadsFormats |
Class with string constants for known formats supported by reads codecs.
|