htsjdk.beta.plugin.reads

Class ReadsFormats

java.lang.Object

htsjdk.beta.plugin.reads.ReadsFormats

public class ReadsFormats
extends java.lang.Object

Class with string constants for known formats supported by reads codecs.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	BAM BAM file format.
static java.lang.String	CRAM CRAM file format.
static java.lang.String	HTSGET_BAM GA4GH htsget BAM format.
static java.lang.String	SAM SAM file format.

Constructor Summary

Constructors

Constructor and Description
ReadsFormats()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SAM

public static final java.lang.String SAM

SAM file format.

See Also:

Constant Field Values

BAM

public static final java.lang.String BAM

BAM file format.

See Also:

Constant Field Values

CRAM

public static final java.lang.String CRAM

CRAM file format.

See Also:

Constant Field Values

HTSGET_BAM

public static final java.lang.String HTSGET_BAM

GA4GH htsget BAM format.

See Also:

Constant Field Values

Constructor Detail

ReadsFormats

public ReadsFormats()