htsjdk.beta.plugin.reads

Interface ReadsEncoder

All Superinterfaces:

java.lang.AutoCloseable, java.io.Closeable, HtsEncoder<SAMFileHeader,SAMRecord>

All Known Implementing Classes:

BAMEncoder, BAMEncoderV1_0, CRAMEncoder, CRAMEncoderV2_1, CRAMEncoderV3_0, SAMEncoder, SAMEncoderV1_0

public interface ReadsEncoder
extends HtsEncoder<SAMFileHeader,SAMRecord>

Base interface for HtsContentType.ALIGNED_READS encoders.

Method Summary

Methods inherited from interface htsjdk.beta.plugin.HtsEncoder

close, getDisplayName, getFileFormat, getVersion, setHeader, write