| Interface | Description |
|---|---|
| HtsInterval |
A common interface for 1-based, closed genomic intervals.
|
| HtsQuery<RECORD> |
Common query interface for
HtsDecoders |
| Class | Description |
|---|---|
| HtsIntervalUtils |
Methods for interconverting between HtsQueryInterval and existing htsjdk types such as Locatable/QueryInterval
|
| HtsQueryInterval |
An concrete query interval implementation of
HtsInterval used for random access queries on
file formats represented by HtsDecoders that support random access. |
| Enum | Description |
|---|---|
| HtsQueryRule |
Query rule values used to determine signal whether a query should match overlapping or contained records.
|