htsjdk.beta.plugin.interval

Interface HtsInterval

All Known Implementing Classes:

HtsQueryInterval

public interface HtsInterval

A common interface for 1-based, closed genomic intervals. This is an evolution of Locatable that can be used to support long genomic coordinates.

Method Summary

Modifier and Type	Method and Description
long	getEnd() Get the inclusive end coordinate for this interval.
java.lang.String	getQueryName() Get the name part of this interval query.
long	getStart() Get the 1-based inclusive start coordinate for this interval.

Method Detail

getQueryName

java.lang.String getQueryName()

Get the name part of this interval query.

Returns:

the name part of this interval query

getStart

long getStart()

Get the 1-based inclusive start coordinate for this interval.

Returns:

the 1-based inclusive start coordinate for this interval

getEnd

long getEnd()

Get the inclusive end coordinate for this interval.

Returns:

the inclusive end coordinate for this interval