Package htsjdk.beta.plugin.hapref

Interface Summary

Interface	Description
HaploidReferenceCodec	Base class for all HtsContentType.HAPLOID_REFERENCE codecs.
HaploidReferenceDecoder	Base class for all HtsContentType.HAPLOID_REFERENCE decoders.
HaploidReferenceEncoder	Base class for all HtsContentType.HAPLOID_REFERENCE encoders.

Class Summary

Class	Description
HaploidReferenceDecoderOptions	Class for haploid reference decoder options.
HaploidReferenceEncoderOptions	Class for haploid reference encoder options.
HaploidReferenceFormats	Class with string constants representing the file formats supported by haploid reference codecs.
HapRefDecoderOptions	Class for haploid reference decoder options.