htsjdk.beta.plugin

Interface Upgradeable

All Known Subinterfaces:

HaploidReferenceCodec, HtsCodec<D,E>, ReadsCodec, VariantsCodec

All Known Implementing Classes:

BAMCodec, BAMCodecV1_0, CRAMCodec, CRAMCodecV2_1, CRAMCodecV3_0, FASTACodecV1_0, HtsgetBAMCodec, HtsgetBAMCodecV1_2, SAMCodec, SAMCodecV1_0, VCFCodec, VCFCodecV3_2, VCFCodecV3_3, VCFCodecV4_0, VCFCodecV4_1, VCFCodecV4_2, VCFCodecV4_3

public interface Upgradeable

Placeholder interface for methods for upgrading one version of a format to a newer version.

Method Summary

Modifier and Type	Method and Description
boolean	runVersionUpgrade(HtsVersion sourceCodecVersion, HtsVersion targetCodecVersion)

Method Detail

runVersionUpgrade

boolean runVersionUpgrade(HtsVersion sourceCodecVersion,
                          HtsVersion targetCodecVersion)