htsjdk.beta.io.bundle

Class IOPathResource

java.lang.Object

htsjdk.beta.io.bundle.BundleResourceBase

htsjdk.beta.io.bundle.IOPathResource

All Implemented Interfaces:

BundleResource, java.io.Serializable

public class IOPathResource
extends BundleResourceBase
implements java.io.Serializable

A BundleResource backed by an IOPath.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
IOPathResource(IOPath ioPath, java.lang.String contentType) Create a BundleResource backed by an IOPath, specifying a content type.
IOPathResource(IOPath ioPath, java.lang.String contentType, java.lang.String format) Create a BundleResource backed by an IOPath, specifying a content type string and format string.

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
java.util.Optional<java.io.InputStream>	getInputStream() Get an InputStream for this resource, or Optional.empty.
java.util.Optional<IOPath>	getIOPath() Get the IOPath backing this resource, or Optional.empty.
java.util.Optional<java.io.OutputStream>	getOutputStream() Get an OutputStream for this resource, or Optional.empty.
java.util.Optional<SeekableStream>	getSeekableStream() Get a SeekableStream for this resource, or Optional.empty.
SignatureStream	getSignatureStream(int signatureProbeLength) Get a SignatureStream for this resource.
int	hashCode()
boolean	hasInputType() Return true if is this resource is backed by a type that can be used for input.
boolean	hasOutputType() Return true if this resource is backed by a type that can be used for output.
boolean	hasSeekableStream() Returns true if this resource can be rendered as a SeekableStream.

Methods inherited from class htsjdk.beta.io.bundle.BundleResourceBase

getContentType, getDisplayName, getFileFormat, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

IOPathResource

public IOPathResource(IOPath ioPath,
                      java.lang.String contentType)

Create a BundleResource backed by an IOPath, specifying a content type.

Parameters:

ioPath - The IOPath for this resource. May not be null.

contentType - The content type for this resource. May not be null or 0-length.

IOPathResource

public IOPathResource(IOPath ioPath,
                      java.lang.String contentType,
                      java.lang.String format)

Create a BundleResource backed by an IOPath, specifying a content type string and format string.

Parameters:

ioPath - The IOPath for this resource. May not be null.

contentType - The content type for this resource. May not be mull or 0-length.

format - The format for this resource. May not be null or 0-length.

Method Detail

getIOPath

public java.util.Optional<IOPath> getIOPath()

Description copied from interface: BundleResource

Get the IOPath backing this resource, or Optional.empty.

Specified by:

getIOPath in interface BundleResource

Overrides:

getIOPath in class BundleResourceBase

Returns:

the IOPath backing this resource, or Optional.empty if the resource has no backing IOPath

getInputStream

public java.util.Optional<java.io.InputStream> getInputStream()

Get an InputStream for this resource, or Optional.empty. return a new stream for the IOPath managed by this resource

Specified by:

getInputStream in interface BundleResource

Overrides:

getInputStream in class BundleResourceBase

Returns:

return a stream for the IOPath managed by this resource

getOutputStream

public java.util.Optional<java.io.OutputStream> getOutputStream()

Description copied from interface: BundleResource

Get an OutputStream for this resource, or Optional.empty.

Specified by:

getOutputStream in interface BundleResource

Overrides:

getOutputStream in class BundleResourceBase

Returns:

an OutputStream for this resource, or Optional.empty if BundleResource.hasOutputType() is false for this resource

hasInputType

public boolean hasInputType()

Description copied from interface: BundleResource

Return true if is this resource is backed by a type that can be used for input. Some resource types, such as InputStreamResource, can be used for input but not for output (see BundleResource.hasOutputType(). Others, such as OutputStreamResource, can be used for output but not for input. Some resource types may be suitable for both (for example see IOPathResource).

The determination is based only on the type of the resource, and does not imply a guarantee about whether the resource type is actually readable.

Specified by:

hasInputType in interface BundleResource

Overrides:

hasInputType in class BundleResourceBase

Returns:

true if the type of this resource makes it suitable for use as a source of input.

hasOutputType

public boolean hasOutputType()

Description copied from interface: BundleResource

Return true if this resource is backed by a type that can be used for output. Some resource types, such as InputStreamResource, can be used for input but not for output (see BundleResource.hasOutputType(). Others, such as OutputStreamResource, can be used for output but not for input. Some resource types may be suitable for both (for example see IOPathResource).

The determination is based only on the type of the resource, and does not imply a guarantee about whether the resource is actually writeable.

Specified by:

hasOutputType in interface BundleResource

Overrides:

hasOutputType in class BundleResourceBase

Returns:

true if the type of this resource makes it suitable for use as target for output.

hasSeekableStream

public boolean hasSeekableStream()

Description copied from interface: BundleResource

Returns true if this resource can be rendered as a SeekableStream.

Specified by:

hasSeekableStream in interface BundleResource

Overrides:

hasSeekableStream in class BundleResourceBase

Returns:

true if this resource can be rendered as a SeekableStream (see BundleResource.getSeekableStream())

getSeekableStream

public java.util.Optional<SeekableStream> getSeekableStream()

Description copied from interface: BundleResource

Get a SeekableStream for this resource, or Optional.empty.

Specified by:

getSeekableStream in interface BundleResource

Overrides:

getSeekableStream in class BundleResourceBase

Returns:

an SeekableStream for this resource, or Optional.empty if this is not an input type (see BundleResource.hasInputType()), or is an input type for which no SeekableStream can be obtained (see BundleResource.hasSeekableStream()).

getSignatureStream

public SignatureStream getSignatureStream(int signatureProbeLength)

Description copied from interface: BundleResource

Get a SignatureStream for this resource. This method requires access to the first signatureProbeLength bytes of the underlying resource. BundleResource implementations that are backed by raw streams that can only be consumed once, such as InputStreamResource, may consume and buffer a portion of the underlying resource's stream in order to allow subsequent callers of the BundleResource.getInputStream()) method to be presented with the entire stream, including the signature. Calls to this method may have the side effect of changing or resetting the current position of the underlying stream; serial calls to BundleResource.getSignatureStream(int) on the same object are not necessarily idempotent; and implementations are free to throw to prevent serial calls to this method.

Specified by:

getSignatureStream in interface BundleResource

Parameters:

signatureProbeLength - the number of bytes of the underlying resource to include in the SignatureStream stream. signatureProbeLength should be expressed in "compressed(/encrypted)" space rather than "plaintext" space. For example, a file format signature may consist of n bytes of ASCII, but for formats that use compressed streams, the codec may need access to an entire compressed block in order to inspect those n bytes. signatureProbeLength should use the compressed block size, in order to ensure that the SignatureStream contains a semantically meaningful fragment of the underlying input.

Returns:

a SignatureStream over the first signatureProbeLength bytes of this resource, for use with signature probing for codec resolution. Only applicable to resources for which BundleResource.hasInputType() is true.

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class BundleResourceBase

hashCode

public int hashCode()

Overrides:

hashCode in class BundleResourceBase