htsjdk.beta.io.bundle

Class BundleResourceType

java.lang.Object

htsjdk.beta.io.bundle.BundleResourceType

public class BundleResourceType
extends java.lang.Object

Namespace for standard constants to specify content type and format for resources contained in a Bundle.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ALIGNED_READS Primary content types for use in resource bundles.
static java.lang.String	FEATURES
static java.lang.String	HAPLOID_REFERENCE
static java.lang.String	MD5
static java.lang.String	READS_BAM
static java.lang.String	READS_CRAM
static java.lang.String	READS_HTSGET_BAM
static java.lang.String	READS_INDEX secondary content types names for primary content type ALIGNED_READS resources
static java.lang.String	READS_INDEX_BAI file format names for secondary content type READS_INDEX resources
static java.lang.String	READS_INDEX_CRAI
static java.lang.String	READS_INDEX_CSI
static java.lang.String	READS_SAM file format names for content type ALIGNED_READS
static java.lang.String	REFERENCE_DICTIONARY secondary content type names for HAPLOID_REFERENCE resources
static java.lang.String	REFERENCE_INDEX
static java.lang.String	VARIANT_CONTEXTS
static java.lang.String	VARIANTS_INDEX secondary content types names for primary content type VARIANT_CONTEXTS resources
static java.lang.String	VARIANTS_VCF file format names for content type VARIANT_CONTEXTS

Constructor Summary

Constructors

Constructor and Description
BundleResourceType()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ALIGNED_READS

public static final java.lang.String ALIGNED_READS

Primary content types for use in resource bundles. These names are aligned with enum values in HtsContentType, since each one represents the name of the primary resource required by HtsCodecs for that HtsContentType.

HAPLOID_REFERENCE

public static final java.lang.String HAPLOID_REFERENCE

VARIANT_CONTEXTS

public static final java.lang.String VARIANT_CONTEXTS

FEATURES

public static final java.lang.String FEATURES

READS_SAM

public static final java.lang.String READS_SAM

file format names for content type ALIGNED_READS

See Also:

Constant Field Values

READS_BAM

public static final java.lang.String READS_BAM

See Also:

Constant Field Values

READS_CRAM

public static final java.lang.String READS_CRAM

See Also:

Constant Field Values

READS_HTSGET_BAM

public static final java.lang.String READS_HTSGET_BAM

See Also:

Constant Field Values

READS_INDEX

public static final java.lang.String READS_INDEX

secondary content types names for primary content type ALIGNED_READS resources

See Also:

Constant Field Values

READS_INDEX_BAI

public static final java.lang.String READS_INDEX_BAI

file format names for secondary content type READS_INDEX resources

See Also:

Constant Field Values

READS_INDEX_CRAI

public static final java.lang.String READS_INDEX_CRAI

See Also:

Constant Field Values

READS_INDEX_CSI

public static final java.lang.String READS_INDEX_CSI

See Also:

Constant Field Values

VARIANTS_INDEX

public static final java.lang.String VARIANTS_INDEX

secondary content types names for primary content type VARIANT_CONTEXTS resources

See Also:

Constant Field Values

VARIANTS_VCF

public static final java.lang.String VARIANTS_VCF

file format names for content type VARIANT_CONTEXTS

See Also:

Constant Field Values

REFERENCE_DICTIONARY

public static final java.lang.String REFERENCE_DICTIONARY

secondary content type names for HAPLOID_REFERENCE resources

See Also:

Constant Field Values

REFERENCE_INDEX

public static final java.lang.String REFERENCE_INDEX

See Also:

Constant Field Values

MD5

public static final java.lang.String MD5

See Also:

Constant Field Values

Constructor Detail

BundleResourceType

public BundleResourceType()