htsjdk.samtools.util

Class IntervalCoordinateComparator

java.lang.Object

htsjdk.samtools.util.IntervalCoordinateComparator

All Implemented Interfaces:

java.io.Serializable, java.util.Comparator<Interval>

public class IntervalCoordinateComparator
extends java.lang.Object
implements java.util.Comparator<Interval>, java.io.Serializable

Comparator that orders intervals based on their sequence index, by coordinate then by strand and finally by name.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
IntervalCoordinateComparator(SAMFileHeader header) Constructs a comparator using the supplied sequence header.

Method Summary

Modifier and Type	Method and Description
int	compare(Interval lhs, Interval rhs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

comparing, comparing, comparingDouble, comparingInt, comparingLong, equals, naturalOrder, nullsFirst, nullsLast, reversed, reverseOrder, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

IntervalCoordinateComparator

public IntervalCoordinateComparator(SAMFileHeader header)

Constructs a comparator using the supplied sequence header.

Method Detail

compare

public int compare(Interval lhs,
                   Interval rhs)

Specified by:

compare in interface java.util.Comparator<Interval>