htsjdk.samtools.reference

Interfaces

• ReferenceSequenceFile

Classes

• BlockCompressedIndexedFastaSequenceFile
• FastaReferenceWriter
• FastaReferenceWriterBuilder
• FastaSequenceFile
• FastaSequenceIndex
• FastaSequenceIndexCreator
• FastaSequenceIndexEntry
• IndexedFastaSequenceFile
• ReferenceSequence
• ReferenceSequenceFileFactory
• ReferenceSequenceFileWalker
• SamLocusAndReferenceIterator
• SamLocusAndReferenceIterator.SAMLocusAndReference