htsjdk.samtools.cram.encoding.external

Class ExternalEncoding<T>

java.lang.Object

htsjdk.samtools.cram.encoding.CRAMEncoding<T>

htsjdk.samtools.cram.encoding.external.ExternalEncoding<T>

Direct Known Subclasses:

ExternalByteEncoding, ExternalIntegerEncoding, ExternalLongEncoding

public abstract class ExternalEncoding<T>
extends CRAMEncoding<T>

Field Summary

Fields

Modifier and Type	Field and Description
protected int	externalBlockContentId

Method Summary

Modifier and Type	Method and Description
byte[]	toByteArray() Subclasses but have a defined serialization of their parameters

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding

buildCodec, buildReadCodec, buildWriteCodec, id, toParam

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

externalBlockContentId

protected final int externalBlockContentId

Method Detail

toByteArray

public byte[] toByteArray()

Description copied from class: CRAMEncoding

Subclasses but have a defined serialization of their parameters

Specified by:

toByteArray in class CRAMEncoding<T>

Returns:

a byte array representing a specific encoding's parameter values