htsjdk.samtools.cram.encoding.external

Class ExternalCodec<T>

java.lang.Object

htsjdk.samtools.cram.encoding.external.ExternalCodec<T>

Type Parameters:

T - data series type to be read or written

All Implemented Interfaces:

CRAMCodec<T>

Direct Known Subclasses:

ByteArrayStopCodec, ExternalByteArrayCodec, ExternalByteCodec

public abstract class ExternalCodec<T>
extends java.lang.Object
implements CRAMCodec<T>

Superclass of Codecs which operate on External Block byte streams Contrast with CoreCodec for Core Block bit streams

Field Summary

Fields

Modifier and Type	Field and Description
protected java.io.ByteArrayInputStream	inputStream
protected java.io.ByteArrayOutputStream	outputStream

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.cram.encoding.CRAMCodec

read, read, write

Field Detail

inputStream

protected final java.io.ByteArrayInputStream inputStream

outputStream

protected final java.io.ByteArrayOutputStream outputStream