htsjdk.samtools.cram.encoding

Class EncodingFactory

java.lang.Object

htsjdk.samtools.cram.encoding.EncodingFactory

public class EncodingFactory
extends java.lang.Object

A helper class to instantiate an appropriate CRAMEncoding for a given DataSeriesType and CRAMEncoding. Also useful to hide encoding implementations.

Constructor Summary

Constructors

Constructor and Description
EncodingFactory()

Method Summary

Modifier and Type	Method and Description
static <T> CRAMEncoding<T>	createEncoding(DataSeriesType valueType, EncodingID id, byte[] params) Create an encoding for the data series type and encoding id.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EncodingFactory

public EncodingFactory()

Method Detail

createEncoding

public static <T> CRAMEncoding<T> createEncoding(DataSeriesType valueType,
                                                 EncodingID id,
                                                 byte[] params)

Create an encoding for the data series type and encoding id.

Type Parameters:

T - encoding object type, like Integer or String.

Parameters:

valueType - data type of the values to be produced/consumed by the encoding

id - encoding id used for data serialization

params - encoding initialization values

Returns:

a new encoding with the requested parameters