htsjdk.samtools.cram.encoding.writer

Class DataSeriesWriter<T>

java.lang.Object

htsjdk.samtools.cram.encoding.writer.DataSeriesWriter<T>

Type Parameters:

T - data type of the series to be written.

public class DataSeriesWriter<T>
extends java.lang.Object

A CRAM Data Series writer for a particular Encoding, DataSeriesType and associated parameters

Note: the class does not have a writeArray method like its counterpart DataSeriesReader because array length is known when writing, therefore the same interface can be used both for single objects and arrays.

Constructor Summary

Constructors

Constructor and Description
DataSeriesWriter(DataSeriesType valueType, EncodingParams params, BitOutputStream bitOutputStream, java.util.Map<java.lang.Integer,java.io.ByteArrayOutputStream> outputMap) Initialize a Data Series writer

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataSeriesWriter

public DataSeriesWriter(DataSeriesType valueType,
                        EncodingParams params,
                        BitOutputStream bitOutputStream,
                        java.util.Map<java.lang.Integer,java.io.ByteArrayOutputStream> outputMap)

Initialize a Data Series writer

Parameters:

valueType - type of the data to write

params - encoding-specific parameters

bitOutputStream - Core data block bit stream, to be written by non-external Encodings

outputMap - External data block byte stream map, to be written by external Encodings