htsjdk.samtools.cram.encoding.reader

Class DataSeriesReader<T>

java.lang.Object

htsjdk.samtools.cram.encoding.reader.DataSeriesReader<T>

Type Parameters:

T - data type of the series to be read.

public class DataSeriesReader<T>
extends java.lang.Object

A CRAM Data Series reader for a particular Encoding, DataSeriesType and associated parameters

Constructor Summary

Constructors

Constructor and Description
DataSeriesReader(DataSeriesType valueType, EncodingParams params, BitInputStream bitInputStream, java.util.Map<java.lang.Integer,java.io.ByteArrayInputStream> inputMap) Initialize a Data Series reader

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataSeriesReader

public DataSeriesReader(DataSeriesType valueType,
                        EncodingParams params,
                        BitInputStream bitInputStream,
                        java.util.Map<java.lang.Integer,java.io.ByteArrayInputStream> inputMap)

Initialize a Data Series reader

Parameters:

valueType - type of the data to read

params - encoding-specific parameters

bitInputStream - Core data block bit stream, to be read by non-external Encodings

inputMap - External data block byte stream map, to be read by external Encodings