htsjdk.tribble.readers

Class AsciiLineReaderIterator

java.lang.Object

htsjdk.tribble.readers.AsciiLineReaderIterator

All Implemented Interfaces:

LocationAware, LineIterator, java.io.Closeable, java.lang.AutoCloseable, java.util.Iterator<java.lang.String>

public class AsciiLineReaderIterator
extends java.lang.Object
implements LocationAware, LineIterator, java.io.Closeable

A class that iterates over the lines and line positions in an AsciiLineReader. This class is slower than other LineIterators because it is driven by AsciiLineReader, but offers the benefit of implementing LocationAware, which is required for indexing. If you do not require LocationAware, consider using LineIteratorImpl as an alternative to this class. Note an important distinction in the way this class and its inner iterator differ: in the inner iterator, the position stored with a line is the position at the start of that line. However, getPosition() of the outer class must return the position at the end of the most-recently-returned line (or the start of the underlying AsciiLineReader, if no line has been read). The latter bit of logic here is required to conform with the interface described by LocationAware.getPosition().

Constructor Summary

Constructors

Constructor and Description
AsciiLineReaderIterator(AsciiLineReader asciiLineReader)

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
long	getPosition() Returns the byte position at the end of the most-recently-read line (a.k.a., the beginning of the next line) from next() in the underlying AsciiLineReader.
boolean	hasNext()
java.lang.String	next()
java.lang.String	peek() Peeks at the next line, without expending any elements in the underlying iterator.
void	remove()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AsciiLineReaderIterator

public AsciiLineReaderIterator(AsciiLineReader asciiLineReader)

Method Detail

close

public void close()
           throws java.io.IOException

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable

Throws:

java.io.IOException

hasNext

public boolean hasNext()

Specified by:

hasNext in interface java.util.Iterator<java.lang.String>

next

public java.lang.String next()

Specified by:

next in interface java.util.Iterator<java.lang.String>

remove

public void remove()

Specified by:

remove in interface java.util.Iterator<java.lang.String>

getPosition

public long getPosition()

Returns the byte position at the end of the most-recently-read line (a.k.a., the beginning of the next line) from next() in the underlying AsciiLineReader.

Specified by:

getPosition in interface LocationAware

peek

public java.lang.String peek()

Description copied from interface: LineIterator

Peeks at the next line, without expending any elements in the underlying iterator.

Specified by:

peek in interface LineIterator