htsjdk.tribble.gelitext

Enum DiploidGenotype

java.lang.Object

java.lang.Enum<DiploidGenotype>

htsjdk.tribble.gelitext.DiploidGenotype

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<DiploidGenotype>

Deprecated.

@Deprecated
public enum DiploidGenotype
extends java.lang.Enum<DiploidGenotype>

Class DiploidGenotype Enum describing all possible combinations of diploid genotype variations; AA, AC, etc.

Enum Constant Summary

Enum Constants

Enum Constant and Description
AA Deprecated.
AC Deprecated.
AG Deprecated.
AT Deprecated.
CC Deprecated.
CG Deprecated.
CT Deprecated.
GG Deprecated.
GT Deprecated.
TT Deprecated.

Method Summary

Methods

Modifier and Type	Method and Description
boolean	containsBase(char base) Deprecated.
boolean	isHet() Deprecated.
static DiploidGenotype	toDiploidGenotype(java.lang.String genotype) Deprecated.
static DiploidGenotype	valueOf(java.lang.String name) Deprecated. Returns the enum constant of this type with the specified name.
static DiploidGenotype[]	values() Deprecated. Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

AA

public static final DiploidGenotype AA

Deprecated.

AC

public static final DiploidGenotype AC

Deprecated.

AG

public static final DiploidGenotype AG

Deprecated.

AT

public static final DiploidGenotype AT

Deprecated.

CC

public static final DiploidGenotype CC

Deprecated.

CG

public static final DiploidGenotype CG

Deprecated.

CT

public static final DiploidGenotype CT

Deprecated.

GG

public static final DiploidGenotype GG

Deprecated.

GT

public static final DiploidGenotype GT

Deprecated.

TT

public static final DiploidGenotype TT

Deprecated.

Method Detail

values

public static DiploidGenotype[] values()

Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (DiploidGenotype c : DiploidGenotype.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static DiploidGenotype valueOf(java.lang.String name)

Deprecated.

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

toDiploidGenotype

public static DiploidGenotype toDiploidGenotype(java.lang.String genotype)

Deprecated.

isHet

public boolean isHet()

Deprecated.

containsBase

public boolean containsBase(char base)

Deprecated.