htsjdk.tribble

Class FeatureCodecHeader

java.lang.Object

htsjdk.tribble.FeatureCodecHeader

public class FeatureCodecHeader
extends java.lang.Object

A class to represent a header of a feature containing file. Specific to a codec. All codecs must return a non-null value now for their header, but the header can be the empty header object or the end case be set to NO_HEADER_END. Note that if the headerEnd value is > 0 the readers will skip the header for the codec upfront, so that decode() doesn't have to deal with potentially seeing header records in the inputstream.

Since:

5/2/12

Field Summary

Fields

Modifier and Type	Field and Description
static FeatureCodecHeader	EMPTY_HEADER An public instance representing no header
static long	NO_HEADER_END The value of the headerEnd field when there's no header

Constructor Summary

Constructors

Constructor and Description
FeatureCodecHeader(java.lang.Object headerValue, long headerEnd) Create a FeatureCodecHeader indicating the contents of the header (can be null) and the byte position in the file where the header ends (not inclusive).

Method Summary

Methods

Modifier and Type	Method and Description
long	getHeaderEnd()
java.lang.Object	getHeaderValue()
boolean	skipHeaderBytes()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NO_HEADER_END

public static final long NO_HEADER_END

The value of the headerEnd field when there's no header

See Also:

Constant Field Values

EMPTY_HEADER

public static final FeatureCodecHeader EMPTY_HEADER

An public instance representing no header

Constructor Detail

FeatureCodecHeader

public FeatureCodecHeader(java.lang.Object headerValue,
                  long headerEnd)

Create a FeatureCodecHeader indicating the contents of the header (can be null) and the byte position in the file where the header ends (not inclusive). headerEnd should be NO_HEADER_END when no header is present.

Parameters:

headerValue - the header data read by the codec

headerEnd - the position (not inclusive) of the end of the header. 1 would mean just the first byte of the file is the header. Zero indicates there's no header at all

Method Detail

getHeaderValue

public java.lang.Object getHeaderValue()

Returns:

the header value provided by the codec for this file

getHeaderEnd

public long getHeaderEnd()

Returns:

to position, not inclusive, where the header ends. Must be >= 0

skipHeaderBytes

public boolean skipHeaderBytes()

Returns:

true if we should skip some bytes to skip this header