htsjdk.tribble

Interface Feature

All Superinterfaces:

Locatable

All Known Subinterfaces:

BEDFeature

All Known Implementing Classes:

FullBEDFeature, GeliTextFeature, SimpleBEDFeature, SimpleFeature, VariantContext

public interface Feature
extends Locatable

Represents a locus on a reference sequence. All Features are expected to return 1-based closed-ended intervals.

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getChr() Deprecated. use getContig() instead

Methods inherited from interface htsjdk.samtools.util.Locatable

getContig, getEnd, getStart

Method Detail

getChr

@Deprecated
java.lang.String getChr()

Deprecated. use getContig() instead

Return the features reference sequence name, e.g chromosome or contig