htsjdk.samtools.cram.lossy

Class BaseCategory

java.lang.Object

htsjdk.samtools.cram.lossy.BaseCategory

public class BaseCategory
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
int	param
BaseCategoryType	type

Method Summary

Methods

Modifier and Type	Method and Description
static BaseCategory	flankingDeletion()
static BaseCategory	insertion()
static BaseCategory	lowerThanCoverage(int coverage)
static BaseCategory	match()
static BaseCategory	mismatch()
static BaseCategory	pileup(int threshold)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

type

public final BaseCategoryType type

param

public final int param

Method Detail

match

public static BaseCategory match()

mismatch

public static BaseCategory mismatch()

flankingDeletion

public static BaseCategory flankingDeletion()

pileup

public static BaseCategory pileup(int threshold)

lowerThanCoverage

public static BaseCategory lowerThanCoverage(int coverage)

insertion

public static BaseCategory insertion()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object