htsjdk.samtools.cram.io

Class CramArray

java.lang.Object

htsjdk.samtools.cram.io.CramArray

public class CramArray
extends java.lang.Object

Methods to read and write CRAM array of integers data type.

Constructor Summary

Constructors

Constructor and Description
CramArray()

Method Summary

Methods

Modifier and Type	Method and Description
static int[]	array(java.io.InputStream inputStream) Read CRAM int array from a InputStream.
static int	write(int[] array, java.io.OutputStream outputStream) Write CRAM int array to a OutputStream.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CramArray

public CramArray()

Method Detail

array

public static int[] array(java.io.InputStream inputStream)
                   throws java.io.IOException

Read CRAM int array from a InputStream.

Parameters:

inputStream - the inputs stream to read from

Returns:

array of integers from the input stream

Throws:

java.io.IOException - as per java IO contract

write

public static int write(int[] array,
        java.io.OutputStream outputStream)
                 throws java.io.IOException

Write CRAM int array to a OutputStream.

Parameters:

array - the array to be written

outputStream - the output stream to write to

Returns:

the number of bits written out

Throws:

java.io.IOException - as per java IO contract