htsjdk.samtools

Class SAMHeaderRecordComparator<T extends AbstractSAMHeaderRecord>

java.lang.Object

htsjdk.samtools.SAMHeaderRecordComparator<T>

All Implemented Interfaces:

java.util.Comparator<T>

public class SAMHeaderRecordComparator<T extends AbstractSAMHeaderRecord>
extends java.lang.Object
implements java.util.Comparator<T>

Provides ordering based on SAM header records' attribute values. Provide the list of attributes to use in the comparison to the constructor. Null attribute values (i.e., those attributes not present in the record) sort behind those that have values.

Constructor Summary

Constructors

Constructor and Description
SAMHeaderRecordComparator(java.lang.String... attributes)

Method Summary

Methods

Modifier and Type	Method and Description
int	compare(T left, T right)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals

Constructor Detail

SAMHeaderRecordComparator

public SAMHeaderRecordComparator(java.lang.String... attributes)

Method Detail

compare

public int compare(T left,
          T right)

Specified by:

compare in interface java.util.Comparator<T extends AbstractSAMHeaderRecord>