htsjdk.samtools

Class SAMFormatException

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

htsjdk.samtools.SAMException

htsjdk.samtools.SAMFormatException

All Implemented Interfaces:

java.io.Serializable

public class SAMFormatException
extends SAMException

Thrown when a SAM file being read or decoded (text or binary) looks bad.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SAMFormatException()
SAMFormatException(java.lang.String s)
SAMFormatException(java.lang.String s, java.lang.Throwable throwable)
SAMFormatException(java.lang.Throwable throwable)

Method Summary

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SAMFormatException

public SAMFormatException()

SAMFormatException

public SAMFormatException(java.lang.String s)

SAMFormatException

public SAMFormatException(java.lang.String s,
                  java.lang.Throwable throwable)

SAMFormatException

public SAMFormatException(java.lang.Throwable throwable)