htsjdk.samtools

Class BinningIndexContent.BinList

java.lang.Object

htsjdk.samtools.BinningIndexContent.BinList

All Implemented Interfaces:

java.lang.Iterable<Bin>

Enclosing class:

BinningIndexContent

public static class BinningIndexContent.BinList
extends java.lang.Object
implements java.lang.Iterable<Bin>

This class is used to encapsulate the list of Bins store in the BAMIndexContent While it is currently represented as an array, we may decide to change it to an ArrayList or other structure

Field Summary

Fields

Modifier and Type	Field and Description
int	maxBinNumber
int	numberOfNonNullBins

Constructor Summary

Constructors

Constructor and Description
BinningIndexContent.BinList(Bin[] binArray, int numberOfNonNullBins)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
int	hashCode()
java.util.Iterator<Bin>	iterator()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

numberOfNonNullBins

public final int numberOfNonNullBins

maxBinNumber

public final int maxBinNumber

Constructor Detail

BinningIndexContent.BinList

public BinningIndexContent.BinList(Bin[] binArray,
                           int numberOfNonNullBins)

Parameters:

binArray - a sparse array representation of the bins. The index into the array is the bin number.

numberOfNonNullBins -

Method Detail

iterator

public java.util.Iterator<Bin> iterator()

Specified by:

iterator in interface java.lang.Iterable<Bin>

Returns:

An iterator over all non-empty bins.

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object