Package org.intermine.model.bio

Class ProtocolShadow

  • All Implemented Interfaces:
    Protocol, org.intermine.model.FastPathObject, org.intermine.model.InterMineFastPathObject, org.intermine.model.InterMineObject, org.intermine.model.ShadowClass
    public class ProtocolShadow
extends java.lang.Object
implements Protocol, org.intermine.model.ShadowClass

    • Field Detail

      • shadowOf

        public static final java.lang.Class<Protocol> shadowOf

      • URI

        protected java.lang.String URI

      • description

        protected java.lang.String description

      • type

        protected java.lang.String type

      • name

        protected java.lang.String name

      • version

        protected java.lang.String version

      • step

        protected java.lang.Integer step

      • ontology

        protected org.intermine.model.InterMineObject ontology

      • study

        protected org.intermine.model.InterMineObject study

      • studyData

        protected org.intermine.model.InterMineObject studyData

      • dataFile

        protected org.intermine.model.InterMineObject dataFile

      • inputs

        protected java.util.Set<StudyData> inputs

      • outputs

        protected java.util.Set<StudyData> outputs

      • id

        protected java.lang.Integer id

    • Constructor Detail

      • ProtocolShadow

        public ProtocolShadow()

    • Method Detail

      • getuRI

        public java.lang.String getuRI()
        Specified by:
        getuRI in interface Protocol

      • setuRI

        public void setuRI​(java.lang.String URI)
        Specified by:
        setuRI in interface Protocol

      • getDescription

        public java.lang.String getDescription()
        Specified by:
        getDescription in interface Protocol

      • setDescription

        public void setDescription​(java.lang.String description)
        Specified by:
        setDescription in interface Protocol

      • getType

        public java.lang.String getType()
        Specified by:
        getType in interface Protocol

      • setType

        public void setType​(java.lang.String type)
        Specified by:
        setType in interface Protocol

      • getName

        public java.lang.String getName()
        Specified by:
        getName in interface Protocol

      • setName

        public void setName​(java.lang.String name)
        Specified by:
        setName in interface Protocol

      • getVersion

        public java.lang.String getVersion()
        Specified by:
        getVersion in interface Protocol

      • setVersion

        public void setVersion​(java.lang.String version)
        Specified by:
        setVersion in interface Protocol

      • getStep

        public java.lang.Integer getStep()
        Specified by:
        getStep in interface Protocol

      • setStep

        public void setStep​(java.lang.Integer step)
        Specified by:
        setStep in interface Protocol

      • proxyOntology

        public void proxyOntology​(org.intermine.objectstore.proxy.ProxyReference ontology)
        Specified by:
        proxyOntology in interface Protocol

      • proxGetOntology

        public org.intermine.model.InterMineObject proxGetOntology()
        Specified by:
        proxGetOntology in interface Protocol

      • proxyStudy

        public void proxyStudy​(org.intermine.objectstore.proxy.ProxyReference study)
        Specified by:
        proxyStudy in interface Protocol

      • proxGetStudy

        public org.intermine.model.InterMineObject proxGetStudy()
        Specified by:
        proxGetStudy in interface Protocol

      • proxyStudyData

        public void proxyStudyData​(org.intermine.objectstore.proxy.ProxyReference studyData)
        Specified by:
        proxyStudyData in interface Protocol

      • proxGetStudyData

        public org.intermine.model.InterMineObject proxGetStudyData()
        Specified by:
        proxGetStudyData in interface Protocol

      • proxyDataFile

        public void proxyDataFile​(org.intermine.objectstore.proxy.ProxyReference dataFile)
        Specified by:
        proxyDataFile in interface Protocol

      • proxGetDataFile

        public org.intermine.model.InterMineObject proxGetDataFile()
        Specified by:
        proxGetDataFile in interface Protocol

      • getId

        public java.lang.Integer getId()
        Specified by:
        getId in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        getId in interface org.intermine.model.InterMineObject

      • setId

        public void setId​(java.lang.Integer id)
        Specified by:
        setId in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        setId in interface org.intermine.model.InterMineObject

      • equals

        public boolean equals​(java.lang.Object o)
        Overrides:
        equals in class java.lang.Object

      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object

      • getFieldValue

        public java.lang.Object getFieldValue​(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException
        Specified by:
        getFieldValue in interface org.intermine.model.FastPathObject
        Throws:
        java.lang.IllegalAccessException

      • getFieldProxy

        public java.lang.Object getFieldProxy​(java.lang.String fieldName)
                               throws java.lang.IllegalAccessException
        Specified by:
        getFieldProxy in interface org.intermine.model.FastPathObject
        Throws:
        java.lang.IllegalAccessException

      • setFieldValue

        public void setFieldValue​(java.lang.String fieldName,
                          java.lang.Object value)
        Specified by:
        setFieldValue in interface org.intermine.model.FastPathObject

      • getFieldType

        public java.lang.Class<?> getFieldType​(java.lang.String fieldName)
        Specified by:
        getFieldType in interface org.intermine.model.FastPathObject

      • getoBJECT

        public org.intermine.model.StringConstructor getoBJECT()
        Specified by:
        getoBJECT in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        getoBJECT in interface org.intermine.model.InterMineObject

      • setoBJECT

        public void setoBJECT​(java.lang.String notXml,
                      org.intermine.objectstore.ObjectStore os)
        Specified by:
        setoBJECT in interface org.intermine.model.InterMineObject

      • setoBJECT

        public void setoBJECT​(java.lang.String[] notXml,
                      org.intermine.objectstore.ObjectStore os)
        Specified by:
        setoBJECT in interface org.intermine.model.InterMineObject

      • addCollectionElement

        public void addCollectionElement​(java.lang.String fieldName,
                                 org.intermine.model.InterMineObject element)

      • getElementType

        public java.lang.Class<?> getElementType​(java.lang.String fieldName)
        Specified by:
        getElementType in interface org.intermine.model.InterMineFastPathObject
        Specified by:
        getElementType in interface org.intermine.model.InterMineObject