Package org.intermine.model.bio

Interface Protocol

All Superinterfaces:

org.intermine.model.FastPathObject, org.intermine.model.InterMineFastPathObject, org.intermine.model.InterMineObject

All Known Implementing Classes:

ProtocolShadow

public interface Protocol
extends org.intermine.model.InterMineObject

Method Summary

Modifier and Type	Method	Description
void	addInputs(StudyData arg)
void	addOutputs(StudyData arg)
void	addParameters(ProtocolParameter arg)
DataFile	getDataFile()
java.lang.String	getDescription()
java.util.Set<StudyData>	getInputs()
java.lang.String	getName()
OntologyTerm	getOntology()
java.util.Set<StudyData>	getOutputs()
java.util.Set<ProtocolParameter>	getParameters()
java.lang.Integer	getStep()
Study	getStudy()
StudyData	getStudyData()
java.lang.String	getType()
java.lang.String	getuRI()
java.lang.String	getVersion()
org.intermine.model.InterMineObject	proxGetDataFile()
org.intermine.model.InterMineObject	proxGetOntology()
org.intermine.model.InterMineObject	proxGetStudy()
org.intermine.model.InterMineObject	proxGetStudyData()
void	proxyDataFile(org.intermine.objectstore.proxy.ProxyReference dataFile)
void	proxyOntology(org.intermine.objectstore.proxy.ProxyReference ontology)
void	proxyStudy(org.intermine.objectstore.proxy.ProxyReference study)
void	proxyStudyData(org.intermine.objectstore.proxy.ProxyReference studyData)
void	setDataFile(DataFile dataFile)
void	setDescription(java.lang.String description)
void	setInputs(java.util.Set<StudyData> inputs)
void	setName(java.lang.String name)
void	setOntology(OntologyTerm ontology)
void	setOutputs(java.util.Set<StudyData> outputs)
void	setParameters(java.util.Set<ProtocolParameter> parameters)
void	setStep(java.lang.Integer step)
void	setStudy(Study study)
void	setStudyData(StudyData studyData)
void	setType(java.lang.String type)
void	setuRI(java.lang.String URI)
void	setVersion(java.lang.String version)

Methods inherited from interface org.intermine.model.FastPathObject

getFieldProxy, getFieldType, getFieldValue, setFieldValue

Methods inherited from interface org.intermine.model.InterMineObject

getElementType, getId, getoBJECT, setId, setoBJECT, setoBJECT

Method Detail

getuRI

java.lang.String getuRI()

setuRI

void setuRI(java.lang.String URI)

getDescription

java.lang.String getDescription()

setDescription

void setDescription(java.lang.String description)

getType

java.lang.String getType()

setType

void setType(java.lang.String type)

getName

java.lang.String getName()

setName

void setName(java.lang.String name)

getVersion

java.lang.String getVersion()

setVersion

void setVersion(java.lang.String version)

getStep

java.lang.Integer getStep()

setStep

void setStep(java.lang.Integer step)

getOntology

OntologyTerm getOntology()

setOntology

void setOntology(OntologyTerm ontology)

proxyOntology

void proxyOntology(org.intermine.objectstore.proxy.ProxyReference ontology)

proxGetOntology

org.intermine.model.InterMineObject proxGetOntology()

getStudy

Study getStudy()

setStudy

void setStudy(Study study)

proxyStudy

void proxyStudy(org.intermine.objectstore.proxy.ProxyReference study)

proxGetStudy

org.intermine.model.InterMineObject proxGetStudy()

getStudyData

StudyData getStudyData()

setStudyData

void setStudyData(StudyData studyData)

proxyStudyData

void proxyStudyData(org.intermine.objectstore.proxy.ProxyReference studyData)

proxGetStudyData

org.intermine.model.InterMineObject proxGetStudyData()

getDataFile

DataFile getDataFile()

setDataFile

void setDataFile(DataFile dataFile)

proxyDataFile

void proxyDataFile(org.intermine.objectstore.proxy.ProxyReference dataFile)

proxGetDataFile

org.intermine.model.InterMineObject proxGetDataFile()

getParameters

java.util.Set<ProtocolParameter> getParameters()

setParameters

void setParameters(java.util.Set<ProtocolParameter> parameters)

addParameters

void addParameters(ProtocolParameter arg)

getInputs

java.util.Set<StudyData> getInputs()

setInputs

void setInputs(java.util.Set<StudyData> inputs)

addInputs

void addInputs(StudyData arg)

getOutputs

java.util.Set<StudyData> getOutputs()

setOutputs

void setOutputs(java.util.Set<StudyData> outputs)

addOutputs

void addOutputs(StudyData arg)