Package org.intermine.bio.dataconversion

Class IsaConverter

java.lang.Object

org.intermine.dataconversion.DataConverter

org.intermine.dataconversion.FileConverter

org.intermine.bio.dataconversion.BioFileConverter

org.intermine.bio.dataconversion.IsaConverter

public class IsaConverter
extends org.intermine.bio.dataconversion.BioFileConverter

Constructor Summary

Constructors

Constructor	Description
IsaConverter(org.intermine.dataconversion.ItemWriter writer, org.intermine.metadata.Model model)	Constructor

Method Summary

Modifier and Type	Method	Description
void	process(java.io.Reader reader)
void	storeProtocols()

Methods inherited from class org.intermine.bio.dataconversion.BioFileConverter

createCrossReference, createSynonym, createSynonym, getDataSet, getDataSet, getDataSource, getOrganism, getSequenceOntologyRefId, makeLocation

Methods inherited from class org.intermine.dataconversion.FileConverter

getCurrentFile, setCurrentFile

Methods inherited from class org.intermine.dataconversion.DataConverter

addUniqueItemId, alias, close, createItem, getItemWriter, getModel, getUniqueItemId, newId, setStoreHook, store, store, store, store, store

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IsaConverter

public IsaConverter(org.intermine.dataconversion.ItemWriter writer,
                    org.intermine.metadata.Model model)

Constructor

Parameters:

writer - the ItemWriter used to handle the resultant items

model - the Model

Method Detail

process

public void process(java.io.Reader reader)
             throws java.lang.Exception

Specified by:

process in class org.intermine.dataconversion.FileConverter

Throws:

java.lang.Exception

storeProtocols

public void storeProtocols()
                    throws org.intermine.objectstore.ObjectStoreException

Throws:

org.intermine.objectstore.ObjectStoreException