org.biojava.nbio.alignment.template

Class CallablePairwiseSequenceScorer<S extends Sequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.alignment.template.CallablePairwiseSequenceScorer<S,C>

Type Parameters:

S - each Sequence of the pair is of type S

C - each element of a Sequence is a Compound of type C

All Implemented Interfaces:

java.util.concurrent.Callable<java.lang.Double>

public class CallablePairwiseSequenceScorer<S extends Sequence<C>,C extends Compound>
extends java.lang.Object
implements java.util.concurrent.Callable<java.lang.Double>

Implements a concurrency wrapper for a PairwiseSequenceScorer.

Author:

Mark Chapman

Constructor Summary

Constructors

Constructor and Description
CallablePairwiseSequenceScorer(PairwiseSequenceScorer<S,C> pss) Creates a pairwise sequence scoring task for simplified parallel execution.

Method Summary

Modifier and Type	Method and Description
java.lang.Double	call()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CallablePairwiseSequenceScorer

public CallablePairwiseSequenceScorer(PairwiseSequenceScorer<S,C> pss)

Creates a pairwise sequence scoring task for simplified parallel execution.

Parameters:

pss - already initialized pairwise sequence scorer

Method Detail

call

public java.lang.Double call()

Specified by:

call in interface java.util.concurrent.Callable<java.lang.Double>