org.biojava.nbio.alignment.template

Class CallablePairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner<S,C>

Type Parameters:

S - each Sequence of the alignment pair is of type S

C - each element of an AlignedSequence is a Compound of type C

All Implemented Interfaces:

java.util.concurrent.Callable<SequencePair<S,C>>

public class CallablePairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
extends java.lang.Object
implements java.util.concurrent.Callable<SequencePair<S,C>>

Implements a concurrency wrapper for a PairwiseSequenceAligner.

Author:

Mark Chapman

Constructor Summary

Constructors

Constructor and Description
CallablePairwiseSequenceAligner(PairwiseSequenceAligner<S,C> psa) Creates a pairwise sequence alignment task for simplified parallel execution.

Method Summary

Modifier and Type	Method and Description
SequencePair<S,C>	call()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CallablePairwiseSequenceAligner

public CallablePairwiseSequenceAligner(PairwiseSequenceAligner<S,C> psa)

Creates a pairwise sequence alignment task for simplified parallel execution.

Parameters:

psa - already initialized pairwise sequence aligner

Method Detail

call

public SequencePair<S,C> call()

Specified by:

call in interface java.util.concurrent.Callable<SequencePair<S extends Sequence<C>,C extends Compound>>