Uses of Class
org.biojava.nbio.alignment.routines.AlignerHelper.Anchor

Packages that use AlignerHelper.Anchor

Package	Description
org.biojava.nbio.alignment.routines
org.biojava.nbio.alignment.template

Uses of AlignerHelper.Anchor in org.biojava.nbio.alignment.routines

Methods in org.biojava.nbio.alignment.routines with parameters of type AlignerHelper.Anchor

Modifier and Type	Method and Description
int	AlignerHelper.Anchor.QueryIndexComparator.compare(AlignerHelper.Anchor o1, AlignerHelper.Anchor o2)

Method parameters in org.biojava.nbio.alignment.routines with type arguments of type AlignerHelper.Anchor

Modifier and Type	Method and Description
static java.util.List<AlignerHelper.Subproblem>	AlignerHelper.Subproblem.getSubproblems(java.util.List<AlignerHelper.Anchor> anchors, int querySequenceLength, int targetSequenceLength) Convert a list of anchors into a subproblem list.

Uses of AlignerHelper.Anchor in org.biojava.nbio.alignment.template

Fields in org.biojava.nbio.alignment.template with type parameters of type AlignerHelper.Anchor

Modifier and Type	Field and Description
protected java.util.List<AlignerHelper.Anchor>	AbstractMatrixAligner.anchors