org.biojava.nbio.alignment.io

Class StockholmStructure.DatabaseReference

java.lang.Object

org.biojava.nbio.alignment.io.StockholmStructure.DatabaseReference

Enclosing class:

StockholmStructure

public static class StockholmStructure.DatabaseReference
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	EXPERT
static java.lang.String	HOMSTRAD
static java.lang.String	INTERPRO
static java.lang.String	LOAD
static java.lang.String	MIM
static java.lang.String	PDB
static java.lang.String	PFAMB
static java.lang.String	PRINTS
static java.lang.String	PROSITE
static java.lang.String	PROSITE_PROFILE
static java.lang.String	SCOP
static java.lang.String	SMART
static java.lang.String	URL

Constructor Summary

Constructors

Constructor and Description
DatabaseReference(java.lang.String representativeAnnotationString)
DatabaseReference(java.lang.String database, java.lang.String reference)

Method Summary

Modifier and Type	Method and Description
java.lang.String	getDatabase()
java.lang.String	getReference()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

EXPERT

public static final java.lang.String EXPERT

See Also:

Constant Field Values

MIM

public static final java.lang.String MIM

See Also:

Constant Field Values

PFAMB

public static final java.lang.String PFAMB

See Also:

Constant Field Values

PRINTS

public static final java.lang.String PRINTS

See Also:

Constant Field Values

PROSITE

public static final java.lang.String PROSITE

See Also:

Constant Field Values

PROSITE_PROFILE

public static final java.lang.String PROSITE_PROFILE

See Also:

Constant Field Values

SCOP

public static final java.lang.String SCOP

See Also:

Constant Field Values

PDB

public static final java.lang.String PDB

See Also:

Constant Field Values

SMART

public static final java.lang.String SMART

See Also:

Constant Field Values

URL

public static final java.lang.String URL

See Also:

Constant Field Values

LOAD

public static final java.lang.String LOAD

See Also:

Constant Field Values

HOMSTRAD

public static final java.lang.String HOMSTRAD

See Also:

Constant Field Values

INTERPRO

public static final java.lang.String INTERPRO

See Also:

Constant Field Values

Constructor Detail

DatabaseReference

public DatabaseReference(java.lang.String database,
                         java.lang.String reference)

DatabaseReference

public DatabaseReference(java.lang.String representativeAnnotationString)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getDatabase

public java.lang.String getDatabase()

getReference

public java.lang.String getReference()